間眅埶AV

 

Biophysics and Soft Matter Seminar

Simulating Reactions and Diffusion: Lessons from Toy Models

Todd Gingrich, Northwestern University
Location: P8445.2

Monday, 09 September 2024 03:30PM PDT
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Synopsis

Chemical systems can deviate from equilibrium for a variety of reasons: because they are kinetically trapped, because they are subject to a time-varying drive, or because they are simultaneously in contact with multiple incommensurate reservoirs. This last scenario, which generates a nonequilibrium steady state (NESS), yields a stationary distribution over microstates that is not Boltzmann and that sustains currents. I will describe my groups efforts to build coarse-grained molecular motor models and to explicitly sample the NESS dynamics driven by a catalyzed fuel decomposition. The open-system molecular dynamics simulations can offer a new perspective on motor design, current reversals, and power strokes.